Basic Information
Locus ID:
Oco16G011510
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 17175049 | 17177222 | + | Oco16G011510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 37,297.82 Da | 30.66 | 91.36 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 34 | 324 | 7.3E-70 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 29 | 328 | 3.24E-95 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 122 | 331 | 2.4E-68 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 30 | 120 | 3.6E-31 | - |
| SMART | SM00220 | serkin_6 | 34 | 324 | 6.0E-95 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 34 | 324 | 45.643646 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 161 | 173 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 40 | 63 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20930.1 | cyclin-dependent kinase B2;2. Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle. | 0 |
| RefSeq | XP_015695765.2 | cyclin-dependent kinase B2-1 [Oryza brachyantha] | 0 |
| Q0J4I1 | Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKB2-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CDB6 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_001716 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology