Basic Information
Locus ID:
Oco16G011090
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 16753819 | 16760092 | + | Oco16G011090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 84,232.19 Da | 40.42 | 90.40 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 57 | 355 | 6.35709E-176 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 373 | 677 | 2.42042E-157 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 378 | 673 | 5.5E-32 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 372 | 677 | 1.02E-50 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 55 | 355 | 3.14E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 371 | 678 | 6.1E-51 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 55 | 356 | 1.2E-32 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 373 | 678 | 35.72607 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 57 | 356 | 27.865812 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_015650251.1 | glycerophosphodiester phosphodiesterase GDPDL3 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LWL3 | glycerophosphodiester phosphodiesterase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology