halophFGD

Basic Information

Locus ID: Oco16G010890

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: A Receptor for Ubiquitination Targets

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG16	16530087	16530851	-	Oco16G010890

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.18	26,079.10 Da	53.48	68.24	-0.61

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	7	41	3.6E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	6	44	1.7E-9	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	6	43	5.6E-8	-
SMART	SM00256	fbox_2	8	49	4.9E-7	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_015649327.1	F-box protein At3g07870 [Oryza sativa Japonica Group]	0
TrEMBL	A2YWJ9	F-box domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29716 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g01450
Poaceae	Echinochloa crus-galli	40	AH02.2360, AH05.2615, AH06.2492, AH07.2155, AH08.1915 ... AH08.1916, AH08.1936, AH08.1937, AH08.1938, AH08.1939, BH05.2696, BH05.2697, BH05.2698, BH07.2120, BH08.2003, BH08.2006, BH08.2007, BH08.2008, BH08.2027, BH08.2028, BH08.2029, BH08.2030, CH01.4744, CH01.4745, CH02.290, CH03.1904, CH07.2029, CH07.2892, CH07.708, CH07.709, CH08.2186, CH08.2188, CH08.2189, CH08.2190, CH08.2191, CH08.2192, CH08.2205, CH08.2206, CH08.2207, CH08.2208
Poaceae	Eleusine coracana subsp. coracana	20	gene-QOZ80_2AG0116100, gene-QOZ80_2AG0116110 ... gene-QOZ80_5BG0421620, gene-QOZ80_8AG0635480, gene-QOZ80_8AG0635490, gene-QOZ80_8AG0635500, gene-QOZ80_8AG0635510, gene-QOZ80_8AG0635530, gene-QOZ80_8AG0635760, gene-QOZ80_8AG0635770, gene-QOZ80_8AG0635800, gene-QOZ80_8AG0635810, gene-QOZ80_8BG0664320, gene-QOZ80_8BG0664480, gene-QOZ80_8BG0664510, gene-QOZ80_8BG0664520, gene-QOZ80_8BG0664530, gene-QOZ80_8BG0664540, gene-QOZ80_8BG0664550, gene-QOZ80_8BG0664560
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.2HG0206410.1.CDS1 ... HORVU.MOREX.r3.3HG0328590.1, HORVU.MOREX.r3.3HG0328700.1, HORVU.MOREX.r3.3HG0328710.1, HORVU.MOREX.r3.7HG0657500.1.CDS1, HORVU.MOREX.r3.7HG0657550.1.CDS1, HORVU.MOREX.r3.7HG0657570.1
Poaceae	Lolium multiflorum	52	gene-QYE76_000480, gene-QYE76_004239, gene-QYE76_006658 ... gene-QYE76_006741, gene-QYE76_006742, gene-QYE76_006745, gene-QYE76_006902, gene-QYE76_007508, gene-QYE76_008741, gene-QYE76_008806, gene-QYE76_009345, gene-QYE76_013006, gene-QYE76_014394, gene-QYE76_014395, gene-QYE76_014398, gene-QYE76_014400, gene-QYE76_017334, gene-QYE76_017549, gene-QYE76_018016, gene-QYE76_019903, gene-QYE76_019904, gene-QYE76_019905, gene-QYE76_019999, gene-QYE76_020064, gene-QYE76_020070, gene-QYE76_020074, gene-QYE76_020800, gene-QYE76_030923, gene-QYE76_030925, gene-QYE76_030929, gene-QYE76_030930, gene-QYE76_037914, gene-QYE76_038422, gene-QYE76_046980, gene-QYE76_055918, gene-QYE76_056424, gene-QYE76_056426, gene-QYE76_056439, gene-QYE76_057290, gene-QYE76_058262, gene-QYE76_058263, gene-QYE76_058751, gene-QYE76_058752, gene-QYE76_058754, gene-QYE76_058755, gene-QYE76_058757, gene-QYE76_058758, gene-QYE76_058759, gene-QYE76_058761, gene-QYE76_058764, gene-QYE76_065272, gene-QYE76_071875
Poaceae	Oryza coarctata	11	Oco15G011940, Oco15G011950, Oco15G011960, Oco16G010630 ... Oco16G010640, Oco16G010890, Oco23G006760, Oco23G006770, Oco24G006440, Oco24G006460, Oco24G006470
Poaceae	Oryza sativa	12	LOC_Os07g39570.1, LOC_Os08g38470.1, LOC_Os08g38480.1 ... LOC_Os08g38490.1, LOC_Os08g38520.1, LOC_Os08g38540.1, LOC_Os12g30920.1, LOC_Os12g30940.1, LOC_Os12g30950.1, LOC_Os12g30960.1, LOC_Os12g30980.1, LOC_Os12g30990.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G092300, gene-BS78_07G176700 ... gene-BS78_07G176800
Poaceae	Puccinellia tenuiflora	32	Pt_Chr0100935, Pt_Chr0200804, Pt_Chr0201487, Pt_Chr0305781 ... Pt_Chr0305832, Pt_Chr0403309, Pt_Chr0500288, Pt_Chr0500292, Pt_Chr0500301, Pt_Chr0500302, Pt_Chr0500622, Pt_Chr0500625, Pt_Chr0500681, Pt_Chr0500684, Pt_Chr0500697, Pt_Chr0504789, Pt_Chr0504790, Pt_Chr0600892, Pt_Chr0600894, Pt_Chr0605414, Pt_Chr0605415, Pt_Chr0605417, Pt_Chr0605418, Pt_Chr0605419, Pt_Chr0605421, Pt_Chr0605424, Pt_Chr0605767, Pt_Chr0605768, Pt_Chr0605769, Pt_Chr0605772, Pt_Chr0704145, Pt_Chr0704174
Poaceae	Sporobolus alterniflorus	4	Chr01G021340, Chr0G003860, Chr20G000380, Chr22G009410
Poaceae	Thinopyrum elongatum	9	Tel1E01G564300, Tel2E01G139500, Tel2E01G889300 ... Tel2E01G891100, Tel5E01G328900, Tel5E01G496600, Tel5E01G496900, Tel5E01G497000, Tel7E01G276300
Poaceae	Triticum aestivum	24	TraesCS1D02G340200.1, TraesCS2A02G060300.1 ... TraesCS2A02G060800.1, TraesCS2A02G522800.1.cds1, TraesCS2B02G552900.1.cds1, TraesCS2D02G524600.1.cds1, TraesCS2D02G524700.1.cds1, TraesCS2D02G524800.1.cds1, TraesCS2D02G525100.1.cds1, TraesCS5A02G309400.1.cds1, TraesCS5A02G309500.1.cds1, TraesCS5B02G310200.1.cds1, TraesCS5B02G310300.1.cds1, TraesCS5B02G530700.1.cds1, TraesCS5D02G316500.1.cds1, TraesCS5D02G316600.1.cds1, TraesCS7A02G140000.1.cds1, TraesCS7A02G141200.1.cds1, TraesCS7B02G041800.1.cds1, TraesCS7B02G300900.1.cds1, TraesCS7D02G141200.1.cds1, TraesCS7D02G141400.1.cds1, TraesCS7D02G142500.1.cds1, TraesCSU02G210300.1.cds1
Poaceae	Zoysia japonica	1	nbis-gene-47607