Basic Information
Locus ID:
Oco16G010000
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 15377948 | 15388515 | - | Oco16G010000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 110,097.32 Da | 55.49 | 65.29 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 464 | 767 | 5.71852E-129 | - |
| Pfam | PF01753 | MYND finger | 118 | 155 | 7.7E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 463 | 766 | 1.7E-44 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 459 | 771 | 6.67E-86 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 115 | 157 | 4.71E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 455 | 777 | 5.1E-92 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 108 | 159 | 1.4E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 463 | 769 | 52.548965 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 118 | 155 | 11.602668 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 118 | 155 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 836 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 964 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 922 | 937 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 908 | 995 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_015695641.2 | ubiquitin carboxyl-terminal hydrolase 17-like [Oryza brachyantha] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1D233 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_009741 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology