Basic Information
Locus ID:
Oco16G008770
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 13643460 | 13644996 | + | Oco16G008770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 31,968.95 Da | 34.40 | 84.60 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 20 | 141 | 3.3E-7 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 163 | 228 | 1.3E-5 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 13 | 269 | 1.52E-83 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 3 | 274 | 4.8E-93 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_015651075.1 | probable CCR4-associated factor 1 homolog 7 [Oryza sativa Japonica Group] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0LVA3 | poly(A)-specific ribonuclease OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology