Basic Information
Locus ID:
Oco16G008200
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 12836519 | 12841474 | + | Oco16G008200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 35,472.62 Da | 54.72 | 83.76 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 32 | 68 | 6.0E-8 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 77 | 173 | 8.95E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 30 | 69 | 4.09E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 26 | 66 | 9.7E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 70 | 226 | 4.0E-11 | IPR032675 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 232 | 243 | - | IPR017900 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26000.1 | Ribonuclease inhibitor. | 0 |
| RefSeq | XP_015648449.1 | F-box protein SKIP28 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q9LU91 | F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0QJA5 | F-box domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology