Basic Information
Locus ID:
Oco16G006490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 9767098 | 9771583 | + | Oco16G006490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 50,936.40 Da | 42.45 | 72.82 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 27 | 332 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 41 | 330 | 8.4E-85 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 22 | 385 | 1.15E-123 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 13 | 399 | 2.9E-134 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 9 | 458 | 5.4E-200 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 182 | 197 | 2.8E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 107 | 124 | 9.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 169 | 185 | 9.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 76 | 94 | 9.5E-60 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 267 | 277 | 2.8E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 150 | 173 | 2.8E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 128 | 148 | 9.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 245 | 263 | 9.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 43 | 60 | 9.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 228 | 241 | 9.5E-60 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 458 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_015648088.1 | histone deacetylase 6 [Oryza sativa Japonica Group] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | Q6ZB59 | Histone deacetylase OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0344100 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology