Basic Information
Locus ID:
Oco16G006440
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 9676139 | 9680566 | - | Oco16G006440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 129,966.86 Da | 31.82 | 102.70 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 251 | 312 | 2.5E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 911 | 1180 | 7.7E-43 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 692 | 747 | 6.9E-13 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 175 | 192 | 0.061 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 352 | 373 | 0.84 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 73 | 2.2E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 60 | 388 | 1.7E-52 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 890 | 1182 | 9.98E-76 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 321 | 790 | 7.48E-65 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 175 | 803 | 2.3E-274 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 126 | 6.5E-16 | IPR032675 |
| Gene3D | G3DSA:3.30.1490.310 | - | 627 | 684 | 2.3E-274 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 875 | 985 | 2.0E-37 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 986 | 1197 | 4.3E-56 | - |
| SMART | SM00220 | serkin_6 | 910 | 1182 | 1.6E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 910 | 1198 | 37.036041 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1032 | 1044 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 916 | 939 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55610.1 | BRI1 like. mutant has Altered vascular cell differentiation; LRR Receptor Kinase | 0 |
| RefSeq | XP_052166211.1 | LOW QUALITY PROTEIN: brassinosteroid LRR receptor kinase BRL3-like [Oryza glaberrima] | 0 |
| Q6ZCZ2 | Brassinosteroid LRR receptor kinase BRL3 OS=Oryza sativa subsp. japonica OX=39947 GN=BRL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CHR4 | non-specific serine/threonine protein kinase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_018212 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology