halophFGD

Basic Information

Locus ID: Oco16G006400

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Broad-Complex, Tramtrack and Bric a brac

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG16	9601657	9603780	-	Oco16G006400

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.10	18,345.53 Da	56.57	80.30	-0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF49599	TRAF domain-like	22	133	4.09E-8	-

KEGG Pathway

KO Term:

K10523 (speckle-type POZ protein)

Pathway:

ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_015649261.1	BTB/POZ and MATH domain-containing protein 1 [Oryza sativa Japonica Group]	0
TrEMBL	A0A0E0LU03	BTB domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	1	BH08.1134
Poaceae	Oryza coarctata	2	Oco15G006580, Oco16G006400
Poaceae	Oryza sativa	1	LOC_Os08g25240.1