Basic Information
Locus ID:
Oco16G005080
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 6137429 | 6144853 | + | Oco16G005080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 62,209.65 Da | 46.26 | 94.83 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 154 | 191 | 1.7E-4 | IPR001810 |
| Pfam | PF16987 | KIX domain | 15 | 89 | 2.1E-10 | IPR036546 |
| SUPERFAMILY | SSF52047 | RNI-like | 277 | 504 | 8.63E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 151 | 199 | 2.49E-10 | IPR036047 |
| Gene3D | G3DSA:1.10.246.20 | Coactivator CBP, KIX domain | 14 | 91 | 4.1E-6 | IPR036529 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 152 | 197 | 8.888098 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 104 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55660.2 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_015649482.1 | F-box/FBD/LRR-repeat protein At5g22660 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q1PFK0 | F-box/LRR-repeat protein At1g55660 OS=Arabidopsis thaliana OX=3702 GN=At1g55660 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0I9I0 | F-box domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology