Basic Information
Locus ID:
Oco16G004890
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 5806629 | 5812193 | - | Oco16G004890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 53,314.95 Da | 45.83 | 89.90 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 321 | 370 | 8.41039E-4 | - |
| Pfam | PF00023 | Ankyrin repeat | 52 | 81 | 1.5E-5 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 208 | 6.2E-14 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 268 | 6.4E-7 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 277 | 1.38E-49 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 317 | 377 | 2.43E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 389 | 4.5E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 147 | 286 | 1.2E-26 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 143 | 5.1E-29 | IPR036770 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 7.1 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 370 | 1.8E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 2.2E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.1 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 4.9E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 256 | 284 | 1600.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 1.8E-5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.223619 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 12.832462 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 8.54937 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 8.534378 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 13.27704 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.471169 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.116116 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 8.789761 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 10.158304 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 11.727859 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 7.3E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 7.3E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_052165668.1 | probable E3 ubiquitin-protein ligase XBOS35 [Oryza glaberrima] | 0 |
| Q7EZ44 | Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS35 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CK13 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_037164 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology