Basic Information
Locus ID:
Oco16G004250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 4688116 | 4689470 | + | Oco16G004250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 27,802.16 Da | 34.77 | 83.62 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 4 | 139 | 1.63857E-18 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 2 | 145 | 5.56E-22 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 3 | 143 | 4.3E-17 | IPR008974 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 3 | 138 | 11.77402 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.2 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_044320991.1 | BTB/POZ and MATH domain-containing protein 1-like [Triticum aestivum] | 0 |
| Q9SRV1 | BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=BPM4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LSJ5 | BTB domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH08.879 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0509720, gene-QOZ80_8AG0617850 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032442 |
| Poaceae | Oryza coarctata | 1 | Oco16G004250 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G926700, Tel2E01G926900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG075810, gene_TRIDC2AG075860 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G543300.1.cds1, TraesCS2A02G543600.1.cds1 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22657 |