HalophFGD

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Basic Information
Locus ID: Oco16G003740
Species & Taxonomic ID: Oryza coarctata & 77588
Genome Assembly: GCA_030770085.1
Description: LRR-repeat protein
Maps and Mapping Data
Chromosome Start End Strand ID
LG16 3974796 3975934 + Oco16G003740
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.68 41,583.10 Da 42.97 79.73 -0.42
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 26 60 1.9E-4 IPR001810
SUPERFAMILY SSF81383 F-box domain 23 65 1.26E-10 IPR036047
Gene3D G3DSA:1.20.1280.50 - 17 73 3.2E-6 -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G38392.1 - 0
RefSeq XP_052164573.1 uncharacterized protein LOC127781626 [Oryza glaberrima] 0
TrEMBL A0A0E0ARY1 F-box domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 12 AH05.1153, AH07.1109, AH07.694, AH08.586, AH08.591, AH08.592 ...
AH08.593, AH08.594, BH07.824, BH08.639, CH05.1355, CH08.730
Poaceae Eleusine coracana subsp. coracana 11 gene-QOZ80_8AG0620710, gene-QOZ80_8AG0620730 ...
gene-QOZ80_8AG0620740, gene-QOZ80_8AG0620780, gene-QOZ80_8AG0620800, gene-QOZ80_8AG0620870, gene-QOZ80_8BG0652330, gene-QOZ80_8BG0652400, gene-QOZ80_8BG0652420, gene-QOZ80_8BG0652480, gene-QOZ80_9AG0685400
Poaceae Hordeum vulgare 8 HORVU.MOREX.r3.1HG0038960.1, HORVU.MOREX.r3.1HG0038990.1 ...
HORVU.MOREX.r3.1HG0038980.1.CDS1, HORVU.MOREX.r3.2HG0213510.1, HORVU.MOREX.r3.5HG0534780.1, HORVU.MOREX.r3.7HG0648190.1, HORVU.MOREX.r3.7HG0649320.1, HORVU.MOREX.r3.7HG0701270.1
Poaceae Lolium multiflorum 16 gene-QYE76_008238, gene-QYE76_032254, gene-QYE76_032481 ...
gene-QYE76_038981, gene-QYE76_038983, gene-QYE76_038986, gene-QYE76_038987, gene-QYE76_040192, gene-QYE76_040193, gene-QYE76_040331, gene-QYE76_040547, gene-QYE76_040550, gene-QYE76_040551, gene-QYE76_040553, gene-QYE76_067650, gene-QYE76_067653
Poaceae Oryza coarctata 9 Oco15G003840, Oco15G003850, Oco15G005330, Oco16G003710 ...
Oco16G003720, Oco16G003730, Oco16G003740, Oco16G005080, Oco16G007060
Poaceae Oryza sativa 13 LOC_Os02g09580.1, LOC_Os08g09710.1, LOC_Os08g09715.1 ...
LOC_Os08g09720.1, LOC_Os08g09730.1, LOC_Os08g09740.1, LOC_Os08g09750.1, LOC_Os08g09760.1, LOC_Os08g09780.1, LOC_Os08g09790.1, LOC_Os08g09910.1, LOC_Os08g09920.1, LOC_Os08g16860.1
Poaceae Paspalum vaginatum 4 gene-BS78_07G078200, gene-BS78_07G078300 ...
gene-BS78_07G078400, gene-BS78_07G078600
Poaceae Puccinellia tenuiflora 10 Pt_Chr0205856, Pt_Chr0304499, Pt_Chr0304500, Pt_Chr0304577 ...
Pt_Chr0502200, Pt_Chr0504563, Pt_Chr0700135, Pt_Chr0700139, Pt_Chr0704764, Pt_Chr0704894
Poaceae Sporobolus alterniflorus 10 Chr20G010380, Chr20G010390, Chr20G010400, Chr20G010410 ...
Chr20G010420, Chr29G009990, Chr29G010000, Chr29G010010, Chr29G010020, Chr29G010030
Poaceae Thinopyrum elongatum 10 Tel2E01G257500, Tel2E01G257800, Tel2E01G976600 ...
Tel2E01G976800, Tel5E01G013500, Tel5E01G853000, Tel5E01G856600, Tel7E01G177300, Tel7E01G189500, Tel7E01G647600
Poaceae Triticum dicoccoides 23 gene_TRIDC2AG014810, gene_TRIDC2AG014820 ...
gene_TRIDC2AG014830, gene_TRIDC2AG014850, gene_TRIDC2AG014870, gene_TRIDC2AG015020, gene_TRIDC2AG015030, gene_TRIDC2AG025260, gene_TRIDC2AG078790, gene_TRIDC2BG017850, gene_TRIDC2BG017870, gene_TRIDC2BG017890, gene_TRIDC2BG017910, gene_TRIDC2BG017920, gene_TRIDC2BG018010, gene_TRIDC2BG086990, gene_TRIDC3AG074950, gene_TRIDC4AG049810, gene_TRIDC4AG058130, gene_TRIDC4AG059410, gene_TRIDC7AG010440, gene_TRIDC7AG042620, gene_TRIDC7BG033780
Poaceae Triticum aestivum 51 TraesCS2A02G121400.1, TraesCS2A02G121500.1 ...
TraesCS2A02G121600.1, TraesCS2A02G121700.1, TraesCS2A02G196300.1, TraesCS2B02G142100.1, TraesCS2B02G142200.1, TraesCS2B02G142400.1, TraesCS2B02G142500.1, TraesCS2B02G142800.1, TraesCS2B02G142900.1, TraesCS2B02G143100.1, TraesCS2B02G143200.1, TraesCS2B02G598900.1, TraesCS2B02G599100.1, TraesCS2B02G599200.1, TraesCS2D02G123500.1, TraesCS2D02G123600.1, TraesCS2D02G124100.1, TraesCS2D02G124200.1, TraesCS2D02G593600.1, TraesCS2D02G593800.1, TraesCS3B02G598300.1, TraesCS3B02G599000.1, TraesCS4A02G329700.1, TraesCS4A02G329900.1, TraesCS4A02G390700.1, TraesCS4B02G025000.1, TraesCS4B02G025100.2, TraesCS5A02G005000.1, TraesCS5A02G005700.1, TraesCS5D02G006900.1, TraesCS5D02G011700.1, TraesCS5D02G543200.1, TraesCS7A02G090800.1, TraesCS7B02G205700.1, TraesCS7B02G284600.1, TraesCS7D02G079300.1, TraesCS7D02G086100.1, TraesCS7D02G302100.1, TraesCS7D02G378600.1, TraesCSU02G037100.1, TraesCSU02G037300.1, TraesCSU02G037400.1, TraesCSU02G163000.1.cds1, TraesCSU02G163100.2, TraesCSU02G174600.1, TraesCSU02G180300.1, TraesCSU02G180700.1, TraesCSU02G192600.1, TraesCSU02G248900.1.cds1
Poaceae Zea mays 1 Zm00001eb171210_P002
Poaceae Zoysia japonica 5 nbis-gene-23586, nbis-gene-23587, nbis-gene-48563 ...
nbis-gene-51333, nbis-gene-51334
Poaceae Zoysia macrostachya 2 Zma_g22619, Zma_g26540
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