Basic Information
Locus ID:
Oco16G003360
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 3407799 | 3415882 | + | Oco16G003360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 113,427.09 Da | 46.20 | 79.45 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 280 | 639 | 7.84361E-81 | - |
| CDD | cd18793 | SF2_C_SNF | 876 | 981 | 1.0683E-49 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 871 | 971 | 2.3E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 292 | 716 | 4.8E-67 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 754 | 789 | 1.2E-4 | IPR018957 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 259 | 639 | 1.06E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 647 | 1028 | 8.64E-56 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 743 | 799 | 7.41E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 405 | 501 | 5.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 738 | 805 | 2.8E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 249 | 337 | 1.7E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 507 | 640 | 1.9E-28 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 654 | 1029 | 7.5E-64 | IPR027417 |
| SMART | SM00490 | helicmild6 | 888 | 971 | 3.4E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 276 | 620 | 2.4E-25 | IPR014001 |
| SMART | SM00184 | ring_2 | 754 | 794 | 1.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 754 | 789 | 10.010774 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 428 | 601 | 12.231831 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 856 | 1024 | 13.40196 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 769 | 778 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 191 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_052164940.1 | helicase-like transcription factor CHR28 [Oryza glaberrima] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CAP8 | Helicase-like transcription factor CHR28 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_000439 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology