Basic Information
Locus ID:
Oco16G003180
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 3146055 | 3151163 | + | Oco16G003180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 61,841.23 Da | 40.50 | 96.31 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 248 | 518 | 7.6E-45 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 132 | 148 | 1.3 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 226 | 522 | 4.45E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 164 | 9.23E-35 | - |
| Gene3D | G3DSA:1.20.5.510 | Single helix bin | 176 | 211 | 2.7E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 324 | 541 | 1.7E-70 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 216 | 323 | 7.4E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 14 | 175 | 1.3E-47 | IPR032675 |
| SMART | SM00220 | serkin_6 | 247 | 521 | 4.4E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 247 | 534 | 36.47068 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 253 | 275 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 370 | 382 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_015649858.1 | LRR receptor kinase BAK1 isoform X1 [Oryza sativa Japonica Group] | 0 |
| B8BB68 | LRR receptor kinase BAK1 OS=Oryza sativa subsp. indica OX=39946 GN=BAK1 PE=2 SV=1 | 0 | |
| TrEMBL | I1QG47 | Protein kinase domain-containing protein OS=Oryza glaberrima OX=4538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology