Basic Information
Locus ID:
Oco16G002720
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 2674436 | 2683186 | + | Oco16G002720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 124,845.63 Da | 42.59 | 80.27 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 446 | 483 | 7.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 919 | 951 | 0.034 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 321 | 526 | 5.31E-23 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 464 | 1097 | 3.61E-41 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 539 | 678 | 1.4E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 767 | 1067 | 9.8E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 308 | 538 | 1.1E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1003 | 1045 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 530 | 573 | 91.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 527 | 0.11 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 7.1E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 913 | 952 | 9.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 375 | 4.4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.3E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 870 | 910 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 7.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 826 | 867 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 576 | 616 | 11.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.733599 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 920 | 954 | 9.968326 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 920 | 961 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.339666 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 492 | 11.07656 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1133 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025883112.1 | LOW QUALITY PROTEIN: protein TPR2-like [Oryza sativa Japonica Group] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A2YRH5 | Protein TOPLESS OS=Oryza sativa subsp. indica OX=39946 GN=OsI_27917 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology