Basic Information
Locus ID:
Oco16G002020
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 1895136 | 1898434 | + | Oco16G002020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 106,131.16 Da | 35.95 | 97.36 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 106 | 120 | 0.92 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 696 | 985 | 9.1E-44 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 421 | 478 | 3.8E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 77 | 1.1E-7 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 30 | 312 | 1.02E-52 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 264 | 601 | 1.57E-66 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 695 | 987 | 1.62E-69 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 105 | 1.1E-8 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 787 | 1003 | 2.2E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 343 | 610 | 2.6E-67 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 106 | 342 | 3.3E-67 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 677 | 786 | 3.0E-18 | - |
| SMART | SM00220 | serkin_6 | 691 | 987 | 6.0E-26 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 274 | 297 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 563 | 586 | 65.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 202 | 226 | 38.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 298 | 322 | 6.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 346 | 370 | 9.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 130 | 154 | 200.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 691 | 991 | 37.106709 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 838 | 850 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 697 | 720 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 746 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 749 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61480.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_040382876.1 | leucine-rich repeat receptor-like protein kinase TDR [Oryza brachyantha] | 0 |
| Q9FII5 | Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana OX=3702 GN=TDR PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CL00 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_031610 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology