Basic Information
Locus ID:
Oco16G001940
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ligase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 1787594 | 1789727 | + | Oco16G001940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 25,062.59 Da | 33.12 | 94.57 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00501 | AMP-binding enzyme | 1 | 206 | 9.0E-51 | IPR000873 |
| SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 1 | 231 | 2.22E-64 | - |
| Gene3D | G3DSA:3.40.50.12780 | - | 1 | 201 | 5.4E-61 | IPR042099 |
| Gene3D | G3DSA:3.30.300.30 | - | 202 | 232 | 1.2E-6 | - |
KEGG Pathway
Pathway:
ko00130 (Ubiquinone and other terpenoid-quinone biosynthesis)
map00130 (Ubiquinone and other terpenoid-quinone biosynthesis)
ko00360 (Phenylalanine metabolism)
map00360 (Phenylalanine metabolism)
ko00940 (Phenylpropanoid biosynthesis)
map00940 (Phenylpropanoid biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Module:
Reaction:
R01616 (ATP + 4-Coumarate + CoA <=> AMP + Diphosphate + p-Coumaroyl-CoA)
R01943 (ATP + Caffeate + CoA <=> AMP + Diphosphate + Caffeoyl-CoA)
R02194 (ATP + Ferulate + CoA <=> AMP + Diphosphate + Feruloyl-CoA)
R02221 (ATP + Sinapate + CoA <=> AMP + Diphosphate + Sinapoyl-CoA)
R02255 (ATP + trans-Cinnamate + CoA <=> AMP + Diphosphate + Cinnamoyl-CoA)
R06583 (5-Hydroxyferulic acid + CoA + ATP <=> 5-Hydroxyferuloyl-CoA + AMP + Diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19010.1 | AMP-dependent synthetase and ligase family protein. | 0 |
| RefSeq | XP_015650198.1 | 4-coumarate--CoA ligase-like 3 [Oryza sativa Japonica Group] | 0 |
| Q6YYZ2 | 4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=4CLL3 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0D3GW90 | 4-coumarate--CoA ligase-like 6 OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23598, jg23601, jg39700 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15073 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004411 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g107340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23785, Sbi_jg7617 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12402 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51212, Sgl56512 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000021123, gene:ENSEOMG00000024829 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0001480, CQ.Regalona.r1.5BG0001620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30030150 |
| Apiaceae | Apium graveolens | 1 | Ag6G00850 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G003350 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708041 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1029.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G06178, Ftri14G09068, Ftri14G21456, Ftri7G01885 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G19010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024787m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g17740.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g017370.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0142, Ceq01G0143 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0129, Cgl01G0131 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g05040 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07080 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.894 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003819, Pov_00029632 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14294, Lb3G19650 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2759, BH01.3089, CH01.3312 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0118500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012968, gene-QYE76_037589 |
| Poaceae | Oryza coarctata | 3 | Oco16G001940, Oco19G011200, Oco20G011080 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g04770.1, LOC_Os10g42800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G271500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503428, Pt_Chr0503469 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr09G006410, Chr13G018320, Chr13G018420, Chr13G018550 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G340700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG029890, gene_TRIDC1BG035380 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G196700.1, TraesCS1B02G211300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb025180_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38192 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15776 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.629, evm.TU.LG17.640 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g00940 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22782 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13326 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20461 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3634 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6832 |
| Salicaceae | Populus euphratica | 1 | populus_peu34108 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635382, gene-LOC132635383 |
| Solanaceae | Solanum chilense | 1 | SOLCI005934200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027934 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16142 |
| Zosteraceae | Zostera marina | 1 | Zosma06g20980.v3.1 |