Basic Information
Locus ID:
Oco16G001780
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 1599844 | 1605218 | - | Oco16G001780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 47,438.46 Da | 49.84 | 92.81 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 118 | 377 | 2.1E-48 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 95 | 378 | 1.75E-72 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 191 | 406 | 4.7E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 91 | 190 | 5.0E-30 | - |
| SMART | SM00220 | serkin_6 | 115 | 379 | 4.9E-27 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 115 | 379 | 38.039555 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 235 | 247 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 427 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54590.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_052165241.1 | calcium/calmodulin-regulated receptor-like kinase 1 [Oryza glaberrima] | 0 |
| Q9FIU5 | Calcium/calmodulin-regulated receptor-like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRLK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LR25 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19409, jg24516 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7379 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008447 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18826, Sbi_jg37267 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5079 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007016 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl22921, Sgl22963, Sgl28023 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000028631, gene:ENSEOMG00000028931 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0021110, CQ.Regalona.r1.4BG0021310 |
| Apiaceae | Apium graveolens | 1 | Ag9G00930 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G003780 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696700, gene-LOC103709977, gene-LOC103715278 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2627.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G21817, Ftri2G10771 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G54590.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013594m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g16550.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g033100.2N, BniB05g034540.2N, BniB08g015850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1217 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1357 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g15590, gene.Cymno17g00270 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g18980 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4820 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.1771, evm.TU.LG12.632 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008940 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G03302, Lb1G03310, Lb2G11358 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.274, BH08.263, CH08.319 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0616730, gene-QOZ80_8BG0644320 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0701970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033168 |
| Poaceae | Oryza coarctata | 2 | Oco15G001660, Oco16G001780 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g04420.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G037500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402505 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G000740, Chr17G000710, Chr29G011910 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G519500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG042890, gene_TRIDC7BG034140 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G307400.1, TraesCS7B02G207700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb416790_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-41522 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23584 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2028, evm.TU.LG02.1685, evm.TU.LG09.233 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g07820, gene.Posoc10g12170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.400 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10976, nbisL1-mrna-10991 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14913 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10419 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.490 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013392 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13285 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23552 |
| Salicaceae | Populus euphratica | 3 | populus_peu00400, populus_peu17438, populus_peu17458 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618273 |
| Solanaceae | Solanum chilense | 1 | SOLCI002639300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024316 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13182, gene_17827 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2845 |
| Zosteraceae | Zostera marina | 3 | Zosma03g24830.v3.1, Zosma04g21850.v3.1, Zosma587g00010.v3.1 |