Basic Information
Locus ID:
Oco16G001530
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 1383164 | 1388138 | - | Oco16G001530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 71,255.24 Da | 56.40 | 93.25 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 123 | 9.02657E-45 | - |
| Pfam | PF00651 | BTB/POZ domain | 27 | 115 | 3.0E-7 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 214 | 479 | 1.1E-94 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 18 | 130 | 2.83E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 18 | 170 | 1.8E-12 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 214 | 503 | 92.677765 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 98 | 9.889041 | IPR000210 |
| Coils | Coil | Coil | 545 | 579 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_015650254.1 | BTB/POZ domain-containing protein At1g30440 [Oryza sativa Japonica Group] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | B8BAG6 | BTB/POZ domain-containing protein At1g30440 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_27703 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology