Basic Information
Locus ID:
Oco16G001400
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 1263883 | 1264740 | + | Oco16G001400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 31,479.22 Da | 33.41 | 93.51 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 104 | 216 | 5.9E-22 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 89 | 215 | 1.12E-26 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 77 | 248 | 3.0E-40 | IPR011333 |
| SMART | SM00225 | BTB_4 | 112 | 218 | 1.0E-19 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 112 | 180 | 15.307725 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_052164950.1 | BTB/POZ and MATH domain-containing protein 2-like [Oryza glaberrima] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A2YQW1 | Speckle-type POZ protein-like protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_27688 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_018090, gene-QYE76_018091, gene-QYE76_026583 ... |
| Poaceae | Oryza coarctata | 2 | Oco15G001250, Oco16G001400 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g03510.1 |