halophFGD

Basic Information

Locus ID: Oco16G001390

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Broad-Complex, Tramtrack and Bric a brac

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG16	1260671	1261709	+	Oco16G001390

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.21	35,565.10 Da	43.18	83.62	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00121	MATH	16	102	1.12856E-8	IPR002083
Pfam	PF00651	BTB/POZ domain	135	222	3.3E-15	IPR000210
SUPERFAMILY	SSF54695	POZ domain	118	254	4.39E-20	IPR011333
SUPERFAMILY	SSF49599	TRAF domain-like	12	105	1.47E-11	-
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	122	222	8.7E-22	IPR011333
Gene3D	G3DSA:6.10.250.3030	-	223	267	7.0E-17	-
SMART	SM00225	BTB_4	137	258	9.0E-11	IPR000210
ProSiteProfiles	PS50097	BTB domain profile.	137	204	13.508391	IPR000210

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10523 (speckle-type POZ protein)

Pathway:

ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G06190.1	BTB-POZ and MATH domain 2.
RefSeq	XP_015649170.2	BTB/POZ and MATH domain-containing protein 2 [Oryza sativa Japonica Group]
Swiss-Prot	Q9M8J9	BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1
TrEMBL	A0A6G1CLN0	BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_032119 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Oryza coarctata	1	Oco16G001390
Poaceae	Oryza sativa	1	LOC_Os08g03500.1