Basic Information
Locus ID:
Oco16G001380
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 1252034 | 1255079 | + | Oco16G001380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.95 | 63,583.07 Da | 63.95 | 73.10 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 300 | 412 | 3.573E-12 | IPR002083 |
| CDD | cd00121 | MATH | 8 | 62 | 0.00561384 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 427 | 520 | 1.2E-13 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 430 | 547 | 1.33E-17 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 8 | 62 | 8.34E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 296 | 412 | 3.43E-14 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 280 | 409 | 1.5E-13 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 410 | 548 | 4.3E-27 | IPR011333 |
| SMART | SM00225 | BTB_4 | 422 | 551 | 8.0E-9 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 277 | 417 | 12.720092 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 407 | 489 | 14.128851 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 150 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.5 | - | 0 |
| RefSeq | XP_025883361.1 | BTB/POZ and MATH domain-containing protein 3 [Oryza sativa Japonica Group] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LQW1 | BTB domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Oco16G001380.