Basic Information
Locus ID:
Oco16G001190
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 1110723 | 1114807 | - | Oco16G001190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 59,155.75 Da | 43.22 | 94.10 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01603 | Protein phosphatase 2A regulatory B subunit (B56 family) | 90 | 501 | 5.0E-185 | IPR002554 |
| SUPERFAMILY | SSF48371 | ARM repeat | 103 | 483 | 1.07E-158 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 97 | 500 | 5.7E-193 | IPR011989 |
| PIRSF | PIRSF028043 | PP2A_B56 | 11 | 517 | 1.8E-238 | IPR002554 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04113 (Meiosis - yeast)
map04113 (Meiosis - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15415.1 | Protein phosphatase 2A regulatory B subunit family protein. B' regulatory subunit of PP2A (AtB'gamma) | 0 |
| RefSeq | XP_006659077.1 | serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Oryza brachyantha] | 0 |
| Q8RW96 | Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana OX=3702 GN=B'GAMMA PE=1 SV=2 | 0 | |
| TrEMBL | J3MPZ3 | Serine/threonine protein phosphatase 2A regulatory subunit OS=Oryza brachyantha OX=4533 GN=102699610 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology