Basic Information
Locus ID:
Oco16G000280
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 251071 | 255127 | + | Oco16G000280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 54,010.90 Da | 61.19 | 77.03 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 269 | 312 | 1.68539E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 45 | 196 | 6.03035E-46 | IPR044744 |
| Pfam | PF02225 | PA domain | 117 | 178 | 2.4E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 269 | 312 | 5.3E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 117 | 186 | 2.88E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 248 | 320 | 1.63E-19 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 62 | 193 | 1.3E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 236 | 317 | 1.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 270 | 311 | 2.1E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 270 | 312 | 12.326995 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_052165371.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Oryza glaberrima] | 0 |
| Q69U49 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RMR1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0P0XAW3 | Os08g0104300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0104300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology