Basic Information
Locus ID:
Oco15G013700
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
CPK24
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 18949307 | 18951986 | - | Oco15G013700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 61,963.44 Da | 46.61 | 80.25 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 480 | 533 | 1.24045E-13 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 70 | 356 | 3.31809E-124 | - |
| Pfam | PF00069 | Protein kinase domain | 71 | 357 | 5.0E-64 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 407 | 463 | 1.7E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 475 | 532 | 6.7E-11 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 66 | 368 | 5.93E-80 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 388 | 533 | 4.79E-38 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 59 | 180 | 3.9E-18 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 181 | 365 | 3.3E-62 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 366 | 535 | 4.8E-46 | - |
| SMART | SM00054 | efh_1 | 507 | 535 | 2.9E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 476 | 504 | 2.4 | IPR002048 |
| SMART | SM00054 | efh_1 | 440 | 468 | 1.5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 71 | 357 | 8.3E-93 | IPR000719 |
| SMART | SM00054 | efh_1 | 404 | 432 | 0.15 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 503 | 538 | 12.532831 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 472 | 499 | 9.492233 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 71 | 357 | 46.463417 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 400 | 435 | 14.262346 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 516 | 528 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 449 | 461 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 219 | 231 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 413 | 425 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 77 | 100 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 48 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_006660341.2 | calcium-dependent protein kinase 21-like [Oryza brachyantha] | 0 |
| Q6ZIU9 | Calcium-dependent protein kinase 21 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J5WGE5 | Calcium-dependent protein kinase 30 OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0010g9274 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH08.2242, BH08.2372, CH08.2548 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638190, gene-QOZ80_8BG0667730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0686030.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030419, gene-QYE76_061945 |
| Poaceae | Oryza coarctata | 2 | Oco15G013700, Oco16G012880 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g42750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G210600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403526 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G002420, Chr29G001060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G466300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG034960, gene_TRIDC7BG026070 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G267000.1, TraesCS7B02G165200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb198360_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17565 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24464 |