Basic Information
Locus ID:
Oco15G013690
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 18942570 | 18949269 | + | Oco15G013690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 68,353.46 Da | 54.53 | 60.38 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 149 | 199 | 5.81713E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 296 | 344 | 5.8E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 219 | 279 | 9.9E-13 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 574 | 602 | 1.8E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 219 | 286 | 2.47E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 298 | 346 | 1.39E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 227 | 6.01E-18 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 275 | 537 | 5.3E-86 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 572 | 603 | 2.8E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 143 | 233 | 2.9E-17 | IPR013083 |
| SMART | SM00547 | zf_4 | 577 | 601 | 5.2E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 292 | 353 | 0.067 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 218 | 279 | 4.5E-17 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 575 | 603 | 8.038557 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 149 | 195 | 8.963311 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 145 | 357 | 47.631851 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 579 | 598 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 49 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_006659646.1 | probable E3 ubiquitin-protein ligase ARI8 [Oryza brachyantha] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | J3MUV7 | RBR-type E3 ubiquitin transferase OS=Oryza brachyantha OX=4533 GN=102707703 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology