Basic Information
Locus ID:
Oco15G013380
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 18489475 | 18494727 | + | Oco15G013380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 36,590.88 Da | 31.93 | 93.06 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07840 | STKc_CDK9_like | 27 | 320 | 7.92825E-177 | - |
| Pfam | PF00069 | Protein kinase domain | 28 | 320 | 1.9E-70 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 22 | 321 | 1.48E-92 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 123 | 323 | 7.3E-65 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 15 | 122 | 1.7E-33 | - |
| SMART | SM00220 | serkin_6 | 27 | 320 | 3.0E-88 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 27 | 320 | 43.509411 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 33 | 56 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 156 | 168 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10270.1 | cyclin-dependent kinase C;1. Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. | 0 |
| RefSeq | XP_052164652.1 | cyclin-dependent kinase C-3 isoform X1 [Oryza glaberrima] | 0 |
| Q6ZAG3 | Cyclin-dependent kinase C-3 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKC-1 PE=3 SV=2 | 0 | |
| TrEMBL | A0A6G1CHX1 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_024075 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg37669, jg39514 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10159, gene_16470 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014861, Ah027336 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_4g074410, BVRB_6g135070, BVRB_6g142360, BVRB_8g192040 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg17377, Sbi_jg24813, Sbi_jg8680 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg19928, Seu_jg642, Seu_jg8704 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00010309, GOSA_00015530, GOSA_00015531, GOSA_00022245 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl24294, Sgl24295, Sgl29470, Sgl29471, Sgl33838, Sgl39201 ... |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000001346, gene:ENSEOMG00000001644 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.4AG0002730, CQ.Regalona.r1.4BG0002840 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30054790, pistato.v30196430 |
| Apiaceae | Apium graveolens | 3 | Ag3G01696, Ag4G02491, Ag4G02492 |
| Arecaceae | Cocos nucifera | 2 | scaffold002056G000060, scaffold003404G000010 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103707911, gene-LOC103716119, gene-LOC120103653 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1806.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G15438, Ftri1G22371 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G10270.1, AT5G64960.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004018m.g.v1.0, Thhalv10013327m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g28040.v2.2, Sp2g28050.v2.2, Sp6g33160.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g051650.2N, BniB04g001080.2N, BniB07g048240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1737 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1798 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07530 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0296s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g05920 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.655 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00026660, Pov_00031670 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02533, Lb7G33473 |
| Poaceae | Echinochloa crus-galli | 9 | AH02.4573, AH05.2613, AH08.1754, BH02.4630, BH05.2695 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0047210, gene-QOZ80_1BG0097070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0058450.1, HORVU.MOREX.r3.3HG0323020.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013578, gene-QYE76_058309, gene-QYE76_072065 |
| Poaceae | Oryza coarctata | 5 | Oco01G030330, Oco02G031490, Oco09G008650, Oco15G013380 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g72790.1, LOC_Os05g32360.1, LOC_Os08g35220.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G407900, gene-BS78_07G156200 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0505111, Pt_Chr0505450, Pt_Chr0605828 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G023700, Chr08G018080, Chr16G014700, Chr17G014090 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G403500, Tel3E01G819200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG036670, gene_TRIDC1BG041670 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G243300.1, TraesCS1B02G254800.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb040540_P002, Zm00001eb055820_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10785 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23088, Zma_g9414 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.683, evm.TU.LG11.139 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g15540 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1679, evm.TU.Scaffold_8_RagTag.120 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10232, nbisL1-mrna-19843 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6393 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13604 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.56, evm.TU.utg000018l.909 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13258, nbisL1-mrna-3099 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12369 |
| Salicaceae | Populus euphratica | 2 | populus_peu10723, populus_peu29507 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603488, gene-LOC132615901 |
| Solanaceae | Solanum chilense | 2 | SOLCI002704400, SOLCI003405100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015644, gene-LOC107023523 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.27998_chr04_+, gene_15016, gene_2879 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G4495, TC02G2966, TC11G0802 |
| Zosteraceae | Zostera marina | 2 | Zosma03g34030.v3.1, Zosma06g04430.v3.1 |