Basic Information
Locus ID:
Oco15G012230
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 17213143 | 17219363 | - | Oco15G012230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 96,381.21 Da | 55.01 | 61.42 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01429 | Methyl-CpG binding domain | 201 | 247 | 1.2E-5 | IPR001739 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 196 | 246 | 4.25E-7 | IPR016177 |
| Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 293 | 393 | 2.7E-6 | - |
| SMART | SM00355 | c2h2final6 | 317 | 340 | 0.5 | IPR013087 |
| SMART | SM00355 | c2h2final6 | 366 | 388 | 0.046 | IPR013087 |
| ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 317 | 345 | 8.517231 | IPR013087 |
| ProSiteProfiles | PS50982 | Methyl-CpG-binding domain (MBD) profile. | 191 | 264 | 9.874458 | IPR001739 |
| ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 366 | 393 | 9.452469 | IPR013087 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 368 | 388 | - | IPR013087 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 319 | 340 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 761 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22310.2 | methyl-CPG-binding domain 8. Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. | 0 |
| RefSeq | XP_006659517.1 | uncharacterized protein LOC102716893 [Oryza brachyantha] | 0 |
| Q9LME6 | Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=MBD8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1D2G0 | C2H2-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_009684 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1258, jg22637 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_21840, gene_21844, gene_21849, gene_26596 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009792, Ah023896 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g009040, BVRB_9g215220 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg12088, Sbi_jg12089, Sbi_jg29321, Sbi_jg3553 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21294, Seu_jg6408 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000865, GOSA_00009644 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl11791, Sgl11947, Sgl17280, Sgl59839 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000002304, gene:ENSEOMG00000013866 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0011740, CQ.Regalona.r1.1BG0014250 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30041030, pistato.v30249230 |
| Apiaceae | Apium graveolens | 1 | Ag4G02746 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G003150 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707977, gene-LOC103722397, gene-LOC120111032 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.253.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G08538, Ftri15G29481, Ftri18G03603, Ftri8G14219 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G22310.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007200m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g030160.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G1337, Ceq09G0639, Ceq09G0646 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G1438, Cgl09G0682, Cgl09G0694 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g06900 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g27720 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8764 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG05.1049, evm.TU.LG06.871, evm.TU.LG08.1197 ... |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002104, Pov_00024361, Pov_00024386 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G15348, Lb2G15349 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2272, AH08.1876, BH03.2122, BH08.1968, CH03.2597 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0538420, gene-QOZ80_6BG0491650 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0488350.1, HORVU.MOREX.r3.7HG0696680.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005915, gene-QYE76_031015 |
| Poaceae | Oryza coarctata | 4 | Oco15G012230, Oco16G010350, Oco17G007210, Oco18G007450 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g37904.2, LOC_Os08g37920.1, LOC_Os09g29750.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G213300, gene-BS78_07G171300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403301, Pt_Chr0701732, Pt_Chr0701765 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr0G015420, Chr10G008120, Chr14G015660, Chr16G016260 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G401100, Tel7E01G508800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG039080, gene_TRIDC5BG041450 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G250100.1, TraesCS5B02G248100.4 ... |
| Poaceae | Zea mays | 3 | Zm00001eb033590_P002, Zm00001eb101320_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-17289, nbis-gene-19587, nbis-gene-30544 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g23167, Zma_g24275, Zma_g32716 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.1791, evm.TU.LG06.583, evm.TU.LG08.691 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g15800, gene.Posoc05g11330 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_2_RagTag.1545, evm.TU.Scaffold_8_RagTag.746 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3984, nbisL1-mrna-9498 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11521, nbisL1-mrna-11522, nbisL1-mrna-5777 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18938, nbisL1-mrna-20479 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.387, evm.TU.utg000018l.522 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003415, Maker00005243 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2819, nbisL1-mrna-2988 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21865 |
| Salicaceae | Populus euphratica | 7 | populus_peu14602, populus_peu24571, populus_peu32261 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598799, gene-LOC132627521 |
| Solanaceae | Solanum chilense | 4 | SOLCI000423700, SOLCI001701100, SOLCI004071900 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010408, gene-LOC107015775 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5971_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2798, TC10G0041 |
| Zosteraceae | Zostera marina | 1 | Zosma01g07380.v3.1 |