Basic Information
Locus ID:
Oco15G011480
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 16345002 | 16353536 | - | Oco15G011480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 84,194.12 Da | 45.01 | 88.25 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 53 | 351 | 1.89763E-171 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 369 | 673 | 7.97071E-159 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 374 | 669 | 1.5E-32 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 368 | 673 | 5.23E-51 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 52 | 348 | 9.68E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 367 | 673 | 1.5E-49 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 52 | 351 | 3.1E-36 | IPR017946 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 26 | 6.0 | - |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 53 | 352 | 30.204401 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 369 | 674 | 33.858444 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 756 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_015696041.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Oryza brachyantha] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0D9X9H5 | glycerophosphodiester phosphodiesterase OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology