Basic Information
Locus ID:
Oco15G010720
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 15604765 | 15610466 | + | Oco15G010720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 48,607.54 Da | 44.49 | 68.30 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 277 | 355 | 3.52394E-29 | - |
| CDD | cd12619 | RRM2_PUB1 | 154 | 228 | 2.64416E-50 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 70 | 136 | 2.7E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 155 | 225 | 2.8E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 279 | 349 | 5.2E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 66 | 234 | 8.15E-44 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 270 | 373 | 2.71E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 254 | 359 | 1.1E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 152 | 246 | 3.8E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 5 | 151 | 3.1E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 69 | 138 | 1.6E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 154 | 227 | 4.3E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 278 | 351 | 1.0E-13 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 277 | 355 | 15.562085 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 68 | 142 | 14.982202 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 153 | 231 | 16.738909 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 272 | - | - |
| Coils | Coil | Coil | 8 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_006659606.1 | RNA-binding protein 208 [Oryza brachyantha] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | J3MUH4 | Oligouridylate-binding protein 1B-like OS=Oryza brachyantha OX=4533 GN=102720169 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology