Basic Information
Locus ID:
Oco15G010560
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
atbpm1,bpm1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 15484450 | 15485131 | + | Oco15G010560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 24,346.65 Da | 54.52 | 94.31 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 114 | 145 | 6.1E-5 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 98 | 211 | 4.16E-9 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 16 | 92 | 9.81E-5 | - |
| Gene3D | G3DSA:6.10.250.3030 | - | 175 | 223 | 4.1E-11 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 92 | 148 | 7.3E-9 | IPR011333 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025875702.1 | BTB/POZ and MATH domain-containing protein 1 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A6G1CEE7 | BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_001782 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 2 | Oco15G010560, Oco16G011990 |