Basic Information
Locus ID:
Oco15G010540
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 15462482 | 15476103 | + | Oco15G010540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 32,814.72 Da | 42.28 | 78.84 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 22 | 135 | 1.10452E-14 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 159 | 256 | 5.7E-22 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 149 | 268 | 1.84E-25 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 3 | 137 | 7.68E-18 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 139 | 283 | 2.6E-33 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 9 | 138 | 1.8E-19 | IPR008974 |
| SMART | SM00225 | BTB_4 | 167 | 272 | 1.0E-17 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 167 | 235 | 18.844347 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 3 | 135 | 13.180343 | IPR002083 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_052166344.1 | BTB/POZ and MATH domain-containing protein 1-like [Oryza glaberrima] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CBX7 | BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_001793 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology