Basic Information
Locus ID:
Oco15G010310
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 15264998 | 15268730 | + | Oco15G010310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 96,965.10 Da | 58.01 | 73.40 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 298 | 875 | 2.3E-32 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 295 | 877 | 1.02E-68 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 264 | 9.06E-7 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 291 | 471 | 1.1E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 584 | 879 | 3.5E-30 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 297 | 878 | 34.724438 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 195 | 266 | 13.046665 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 80 | 153 | 12.084429 | IPR001607 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 298 | 313 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 757 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 761 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_015695675.1 | ubiquitin carboxyl-terminal hydrolase 2-like [Oryza brachyantha] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | J3MUL9 | ubiquitinyl hydrolase 1 OS=Oryza brachyantha OX=4533 GN=102705656 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology