Basic Information
Locus ID:
Oco15G010300
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 15248148 | 15252496 | + | Oco15G010300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 100,308.69 Da | 50.18 | 76.13 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02667 | Peptidase_C19K | 314 | 913 | 5.27036E-60 | - |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 215 | 281 | 7.7E-6 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 314 | 912 | 6.6E-32 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 57 | 152 | 2.12E-5 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 310 | 914 | 7.06E-68 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 215 | 280 | 4.87E-7 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 309 | 648 | 6.0E-29 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 730 | 916 | 1.3E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 167 | 4.5E-5 | IPR013083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 313 | 915 | 32.349743 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 81 | 153 | 12.587925 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 210 | 282 | 13.975336 | IPR001607 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 314 | 329 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_015648956.1 | ubiquitin carboxyl-terminal hydrolase 1 [Oryza sativa Japonica Group] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0LX56 | Ubiquitinyl hydrolase 1 OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology