Basic Information
Locus ID:
Oco15G010290
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 15243971 | 15245830 | + | Oco15G010290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 39,988.31 Da | 45.48 | 72.33 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 128 | 359 | 7.5E-21 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 97 | 363 | 3.53E-36 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 20 | 363 | 4.0E-36 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 362 | 21.291668 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 297 | 315 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_015648956.1 | ubiquitin carboxyl-terminal hydrolase 1 [Oryza sativa Japonica Group] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0QLI0 | USP domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology