Basic Information
Locus ID:
Oco15G010280
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 15226669 | 15230942 | + | Oco15G010280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 89,563.47 Da | 42.11 | 74.34 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02667 | Peptidase_C19K | 192 | 812 | 3.07984E-57 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 192 | 811 | 7.4E-36 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 95 | 162 | 3.9E-7 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 96 | 160 | 1.94E-5 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 188 | 813 | 2.75E-73 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 186 | 816 | 1.5E-67 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 178 | 4.4E-7 | IPR013083 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 90 | 163 | 12.274639 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 191 | 814 | 35.096378 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 192 | 207 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 749 | 767 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_015648956.1 | ubiquitin carboxyl-terminal hydrolase 1 [Oryza sativa Japonica Group] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A2YXB5 | USP domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology