Basic Information
Locus ID:
Oco15G010270
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 15206239 | 15213322 | + | Oco15G010270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 115,112.86 Da | 49.44 | 73.77 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 405 | 1030 | 1.9E-27 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 267 | 353 | 4.24E-6 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 403 | 1031 | 1.08E-60 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 812 | 1042 | 8.5E-25 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 397 | 681 | 3.2E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 208 | 5.0E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 264 | 369 | 4.2E-9 | IPR013083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 404 | 1044 | 29.345608 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 292 | 354 | 12.380932 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 131 | 193 | 11.950163 | IPR001607 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 405 | 420 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 976 | 994 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 896 | 919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 881 | 919 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_015695788.1 | ubiquitin carboxyl-terminal hydrolase 1-like [Oryza brachyantha] | 0 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 0 | |
| TrEMBL | J3MUM3 | ubiquitinyl hydrolase 1 OS=Oryza brachyantha OX=4533 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology