Basic Information
Locus ID:
Oco15G010260
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 15199896 | 15204577 | + | Oco15G010260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 90,913.75 Da | 44.14 | 85.95 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02667 | Peptidase_C19K | 321 | 830 | 7.22084E-63 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 321 | 829 | 7.5E-31 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 288 | 2.59E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 63 | 149 | 2.24E-6 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 320 | 831 | 2.94E-67 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 313 | 520 | 2.0E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 298 | 5.5E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 167 | 1.5E-6 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 574 | 833 | 6.5E-34 | - |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 88 | 150 | 12.789324 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 227 | 289 | 11.994919 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 320 | 832 | 34.309582 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 321 | 336 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 767 | 785 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_015695808.1 | ubiquitin carboxyl-terminal hydrolase 2-like [Oryza brachyantha] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | J3MUM3 | ubiquitinyl hydrolase 1 OS=Oryza brachyantha OX=4533 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology