Basic Information
Locus ID:
Oco15G010250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 15187883 | 15198969 | + | Oco15G010250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 40,599.79 Da | 50.68 | 86.72 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 81 | 205 | 1.1E-7 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 80 | 241 | 3.92E-29 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 69 | 313 | 9.4E-28 | - |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 1 | 49 | 10.350164 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 80 | 372 | 14.711184 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 81 | 96 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 372 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_015648675.1 | ubiquitin carboxyl-terminal hydrolase 2 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 0 | |
| TrEMBL | B8B8X1 | Ubiquitin carboxyl-terminal hydrolase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29989 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology