Basic Information
Locus ID:
Oco15G008820
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 13579964 | 13584665 | + | Oco15G008820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.39 | 42,010.54 Da | 50.48 | 86.28 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.09519E-27 | - |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 1.7E-15 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 162 | 197 | 1.2E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 343 | 379 | 2.4E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 263 | 319 | 5.1E-20 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 259 | 324 | 6.8E-20 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 88 | 1.15E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 322 | 393 | 5.8E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 156 | 206 | 1.95E-10 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 6.7E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 152 | 202 | 1.3E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 253 | 319 | 2.6E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 336 | 383 | 8.2E-21 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.0E-16 | IPR000626 |
| SMART | SM00165 | uba_6 | 159 | 199 | 0.09 | IPR015940 |
| SMART | SM00165 | uba_6 | 344 | 381 | 4.1E-9 | IPR015940 |
| SMART | SM00727 | CBM | 261 | 304 | 1.9E-6 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 386 | 1.1E-106 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 157 | 200 | 12.16134 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 342 | 382 | 14.860215 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.344984 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 338 | 354 | 2.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 355 | 369 | 2.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 289 | 311 | 2.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 370 | 385 | 2.3E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 100 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_052166207.1 | probable ubiquitin receptor RAD23 isoform X1 [Oryza glaberrima] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1DBI7 | Ubiquitin receptor RAD23 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_000014 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology