Basic Information
Locus ID:
Oco15G008170
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 12718720 | 12729732 | + | Oco15G008170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 44,352.82 Da | 54.53 | 50.28 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 250 | 287 | 6.6E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 293 | 2.58E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 312 | 3.8E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 251 | 286 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 251 | 287 | 12.282736 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 267 | 276 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67180.5 | - | 0 |
| RefSeq | XP_006659394.1 | uncharacterized protein LOC102704439 [Oryza brachyantha] | 0 |
| TrEMBL | J3MSZ3 | BRCT domain-containing protein OS=Oryza brachyantha OX=4533 GN=102704439 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17521 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13268 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034857 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g031340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21060, Sbi_jg22737 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16612 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018274 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl62408, Sgl62409, Sgl66956, Sgl66958 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016789, gene:ENSEOMG00000020082 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0021980, CQ.Regalona.r1.2AG0023790 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30192040 |
| Apiaceae | Apium graveolens | 1 | AgUnG00299 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G008960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701730 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2287.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G19550 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G67180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018524m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22110.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g063170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0797 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0806 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0208s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g26530 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.401, evm.TU.LG12.489 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024086 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11242 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1475, BH08.1496, CH08.1632 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0004160.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032005 |
| Poaceae | Oryza coarctata | 2 | Oco15G008170, Oco16G007850 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g31930.1, LOC_Os12g14840.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G132300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403226 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G013950, Chr17G013380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G058200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG002630, gene_TRIDC1BG003490 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G025700.1, TraesCS1B02G032600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb042310_P002, Zm00001eb178960_P005 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG15.342 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g15330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1648 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1950, nbisL1-mrna-2097 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18315 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2854 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.239 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001827 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5338 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13014 |
| Salicaceae | Populus euphratica | 1 | populus_peu09480 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132615354, gene-LOC132623345, gene-LOC132628649 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009390 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17293 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0053 |
| Zosteraceae | Zostera marina | 1 | Zosma03g16770.v3.1 |