Basic Information
Locus ID:
Oco15G006580
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 9596178 | 9597434 | - | Oco15G006580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 44,887.74 Da | 43.78 | 87.18 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 30 | 150 | 1.2584E-18 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 183 | 302 | 1.0E-21 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 22 | 154 | 6.21E-21 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 170 | 303 | 6.67E-24 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 165 | 302 | 2.2E-28 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 20 | 154 | 5.3E-17 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 307 | 382 | 9.6E-6 | - |
| SMART | SM00225 | BTB_4 | 186 | 307 | 1.4E-21 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 186 | 268 | 15.680001 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 18 | 149 | 14.84236 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_015649261.1 | BTB/POZ and MATH domain-containing protein 1 [Oryza sativa Japonica Group] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | Q6Z0F3 | BTB domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1790_D02.2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH08.1134 |
| Poaceae | Oryza coarctata | 2 | Oco15G006580, Oco16G006400 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g25240.1 |