Basic Information
Locus ID:
Oco15G005890
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 7287100 | 7297054 | - | Oco15G005890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 64,778.37 Da | 25.24 | 107.75 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 445 | 541 | 3.52155E-28 | - |
| CDD | cd00030 | C2 | 274 | 376 | 2.9561E-26 | - |
| Pfam | PF00168 | C2 domain | 272 | 376 | 1.0E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 82 | 259 | 3.6E-17 | IPR039010 |
| Pfam | PF00168 | C2 domain | 443 | 536 | 2.0E-26 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 270 | 402 | 3.84E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 439 | 562 | 5.69E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 423 | 561 | 2.7E-36 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 268 | 409 | 1.5E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 273 | 373 | 2.1E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 444 | 542 | 1.3E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 250 | 374 | 21.109753 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 425 | 543 | 22.111092 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 77 | 259 | 28.77515 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 486 | 499 | 5.1E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 508 | 516 | 5.1E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 460 | 472 | 5.1E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015650839.1 | synaptotagmin-5 [Oryza sativa Japonica Group] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | Q69UK6 | Putative C2 domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=P0045D08.119 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology