Basic Information
Locus ID:
Oco15G005330
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 6112156 | 6114631 | + | Oco15G005330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 37,496.56 Da | 46.95 | 99.79 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 34 | 70 | 3.6E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 30 | 75 | 7.72E-13 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 155 | 234 | 3.34E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 73 | 4.2E-7 | - |
| SMART | SM00256 | fbox_2 | 37 | 77 | 0.0099 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 31 | 76 | 9.179537 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56420.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_015649482.1 | F-box/FBD/LRR-repeat protein At5g22660 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q9FM89 | F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana OX=3702 GN=At5g56420 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CF08 | F-box domain-containing protein (Fragment) OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_009155 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology