Basic Information
Locus ID:
Oco15G005270
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 6035066 | 6039376 | + | Oco15G005270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 37,235.53 Da | 54.21 | 85.51 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 246 | 2.23E-12 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 348 | 2.8E-19 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30840.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_040382848.1 | nuclear pore complex protein NUP43 [Oryza brachyantha] | 0 |
| Q24JJ9 | Nuclear pore complex protein NUP43 OS=Arabidopsis thaliana OX=3702 GN=NUP43 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LT16 | WD_REPEATS_REGION domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4021 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10873 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014913 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191730 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24786, Sbi_jg8652 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19954 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022271 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42559, Sgl47313 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008845, gene:ENSEOMG00000011116 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0017270 |
| Apiaceae | Apium graveolens | 1 | Ag10G02784 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G005860, COCNU_14G005870 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717092 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.301.V1.1, AsparagusV1_02.314.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G10959 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G30840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025548m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g28720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g085050.2N |
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq03G2616, Ceq03G2618, Ceq03G2620, Ceq03G2624, Ceq03G2632 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2766, Cgl03G2769, Cgl03G2774 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05080 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0401s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06050 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7325 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.351 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015608 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.924, BH08.951, CH08.1073 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0624510, gene-QOZ80_8BG0652720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0005810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032285 |
| Poaceae | Oryza coarctata | 2 | Oco15G005270, Oco16G004980 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g16600.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G098400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402807 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G008990, Chr29G008690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G076200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG003960, gene_TRIDC1BG004950 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G035000.1, TraesCS1B02G051100.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb038770_P001, Zm00001eb046820_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44730 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22730 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2601, evm.TU.LG23.824 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g24710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.187 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13398 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21234 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16616 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.121 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015088 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16646 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14574 |
| Salicaceae | Populus euphratica | 1 | populus_peu12196 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602908 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024389 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8231 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0932 |
| Zosteraceae | Zostera marina | 1 | Zosma06g15900.v3.1 |