Basic Information
Locus ID:
Oco15G005170
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 5862566 | 5868293 | - | Oco15G005170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 53,029.56 Da | 42.22 | 90.87 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 52 | 82 | 8.6E-6 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 273 | 7.3E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 208 | 2.1E-14 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 278 | 1.24E-50 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 317 | 376 | 1.81E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 144 | 280 | 5.8E-27 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 387 | 3.1E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 143 | 5.4E-29 | IPR036770 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 4.8 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 1.8E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 370 | 1.3E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 3.8E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 2.8E-5 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 10.173057 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 12.832462 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 8.534378 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 8.54937 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 12.9031 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 13.27704 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.116116 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.28545 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 11.54089 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.24383 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 7.3E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 7.3E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_052165668.1 | probable E3 ubiquitin-protein ligase XBOS35 [Oryza glaberrima] | 0 |
| Q7EZ44 | Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS35 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CK13 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_037164 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology