Basic Information
Locus ID:
Oco15G004500
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 4671093 | 4672178 | - | Oco15G004500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 36,714.05 Da | 39.44 | 78.00 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 18 | 84 | 5.4093E-13 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 140 | 255 | 2.43234E-45 | - |
| Pfam | PF00651 | BTB/POZ domain | 143 | 256 | 1.1E-26 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 16 | 90 | 2.45E-17 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 134 | 255 | 3.02E-29 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 128 | 252 | 3.3E-34 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 258 | 324 | 1.1E-12 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 17 | 116 | 3.4E-13 | IPR008974 |
| SMART | SM00225 | BTB_4 | 152 | 258 | 5.9E-21 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 17 | 128 | 11.595034 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 152 | 219 | 17.872293 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047075010.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CK91 | BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_032075 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032455 |
| Poaceae | Oryza coarctata | 1 | Oco15G004500 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G958600 |
| Poaceae | Triticum aestivum | 2 | TraesCS7A02G550800.1.cds1, TraesCS7D02G537000.1.cds1 |