Basic Information
Locus ID:
Oco15G004480
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 4625211 | 4626768 | - | Oco15G004480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 44,775.47 Da | 50.71 | 96.23 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 59 | 187 | 1.61799E-24 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 212 | 325 | 6.3375E-45 | - |
| Pfam | PF00651 | BTB/POZ domain | 218 | 325 | 9.1E-28 | IPR000210 |
| Pfam | PF00917 | MATH domain | 81 | 187 | 1.3E-4 | IPR002083 |
| SUPERFAMILY | SSF54695 | POZ domain | 208 | 325 | 1.79E-31 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 58 | 192 | 1.96E-27 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 204 | 322 | 3.5E-36 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 327 | 394 | 1.7E-13 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 57 | 192 | 1.0E-23 | IPR008974 |
| SMART | SM00225 | BTB_4 | 226 | 328 | 2.5E-23 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 58 | 187 | 20.774485 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 226 | 293 | 18.285933 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_039855186.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum virgatum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CJZ7 | BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_032074 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 2 | Oco15G004450, Oco15G004480 |