Basic Information
Locus ID:
Oco15G004450
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 4561155 | 4563135 | - | Oco15G004450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 37,184.39 Da | 44.18 | 84.74 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 18 | 134 | 4.66056E-17 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 146 | 268 | 9.7E-21 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 142 | 267 | 2.75E-22 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 17 | 130 | 1.59E-20 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 141 | 264 | 6.4E-30 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 265 | 329 | 7.5E-16 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 18 | 140 | 1.7E-16 | IPR008974 |
| SMART | SM00225 | BTB_4 | 155 | 272 | 5.4E-14 | IPR000210 |
| SMART | SM00061 | math_3 | 24 | 128 | 0.0014 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 19 | 146 | 13.487177 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 155 | 234 | 15.121588 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_039855186.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum virgatum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D9X5L0 | BTB domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 2 | Oco15G004450, Oco15G004480 |